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  "Package": "FAMetA",
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  "Title": "Fatty Acid Metabolic Analysis",
  "Version": "0.1.6",
  "Authors@R": "c(person(\"Maribel\", \"Alcoriza-Balaguer\",\nemail = \"maribel_alcoriza@iislafe.es\",\nrole = c(\"aut\", \"cre\")),\nperson(\"Juan Carlos\", \"Garcia-Cañaveras\",\nemail = \"juancarlos_garcia@iislafe.es\",\nrole = \"ctb\"),\nperson(\"Agustin\", \"Lahoz\",\nemail = \"agustin.lahoz@uv.es\",\nrole = \"ths\"))",
  "Description": "Fatty acid metabolic analysis aimed to the estimation of\nFA import (I), de novo synthesis (S), fractional contribution\nof the 13C-tracers (D0, D1, D2), elongation (E) and\ndesaturation (Des) based on mass isotopologue data.",
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  "Config/pak/sysreqs": "cmake make libicu-dev libuv1-dev libxml2-dev\nlibx11-dev zlib1g-dev",
  "Repository": "https://maialba3.r-universe.dev",
  "Date/Publication": "2024-02-23 08:52:58 UTC",
  "RemoteUrl": "https://github.com/maialba3/fameta",
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  "Packaged": {
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    "User": "root"
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  "Author": "Maribel Alcoriza-Balaguer [aut, cre],\nJuan Carlos Garcia-Cañaveras [ctb],\nAgustin Lahoz [ths]",
  "Maintainer": "Maribel Alcoriza-Balaguer <maribel_alcoriza@iislafe.es>",
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    "searchIS",
    "summarizeResults",
    "synthesisAnalysis"
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        "product",
        "parameter"
      ],
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      "table": true,
      "tojson": true
    },
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      "name": "examplefadata",
      "title": "Example fadata list.",
      "object": "examplefadata",
      "class": [
        "list"
      ],
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      "table": false,
      "tojson": true
    },
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      "name": "fattyacidsdb",
      "title": "Fatty Acids database.",
      "object": "fattyacidsdb",
      "class": [
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      ],
      "fields": [
        "formula",
        "total",
        "Mass"
      ],
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      "table": true,
      "tojson": true
    },
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      "name": "parameters",
      "title": "Parameters for FA metabolic analysis.",
      "object": "parameters",
      "class": [
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      ],
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        "M",
        "S16",
        "E1",
        "E2",
        "E3",
        "E4",
        "E5"
      ],
      "rows": 167,
      "table": true,
      "tojson": true
    },
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      "title": "Toy example fadata list.",
      "object": "ssexamplefadata",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    }
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      "page": "addFA",
      "title": "Add missing FA annotations",
      "topics": [
        "addFA"
      ]
    },
    {
      "page": "annotateFA",
      "title": "FA annotation",
      "topics": [
        "annotateFA"
      ]
    },
    {
      "page": "blankSubstraction",
      "title": "substract blank samples.",
      "topics": [
        "blankSubstraction"
      ]
    },
    {
      "page": "changeFArt",
      "title": "Modify rt peak limits of annotated FAs",
      "topics": [
        "changeFArt"
      ]
    },
    {
      "page": "correctNatAb13C",
      "title": "correct data for natural abundance of 13C using accucor algorithm.",
      "topics": [
        "correctNatAb13C"
      ]
    },
    {
      "page": "curateFAannotations",
      "title": "Modify FA annotations",
      "topics": [
        "curateFAannotations"
      ]
    },
    {
      "page": "dataCorrection",
      "title": "Data correction for natural abundance of 13C and data normalization using internal standards followed by blank substraction.",
      "topics": [
        "dataCorrection"
      ]
    },
    {
      "page": "desaturationAnalysis",
      "title": "Desaturation analysis of fatty acids.",
      "topics": [
        "desaturationAnalysis"
      ]
    },
    {
      "page": "desaturationsdb",
      "title": "Desaturation reactions database.",
      "topics": [
        "desaturationsdb"
      ]
    },
    {
      "page": "elongationAnalysis",
      "title": "Elongation analysis of fatty acids longer than 16 carbons.",
      "topics": [
        "elongationAnalysis"
      ]
    },
    {
      "page": "examplefadata",
      "title": "Example fadata list.",
      "topics": [
        "examplefadata"
      ]
    },
    {
      "page": "externalNormalization",
      "title": "External normalization using additional measures (i.e. protein levels).",
      "topics": [
        "externalNormalization"
      ]
    },
    {
      "page": "fattyacidsdb",
      "title": "Fatty Acids database.",
      "topics": [
        "fattyacidsdb"
      ]
    },
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      "title": "Data normalization using internal stardards.",
      "topics": [
        "normalizeIS"
      ]
    },
    {
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      "title": "Parameters for FA metabolic analysis.",
      "topics": [
        "parameters"
      ]
    },
    {
      "page": "plotFA",
      "title": "Plot FA EICs",
      "topics": [
        "plotFA"
      ]
    },
    {
      "page": "readfadatafile",
      "title": "read FA data from a csv file.",
      "topics": [
        "readfadatafile"
      ]
    },
    {
      "page": "removeFA",
      "title": "Remove incorrect FA annotations",
      "topics": [
        "removeFA"
      ]
    },
    {
      "page": "searchFAisotopes",
      "title": "Search FA isotopes",
      "topics": [
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      ]
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      "topics": [
        "searchIS"
      ]
    },
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      "title": "Toy example fadata list.",
      "topics": [
        "ssexamplefadata"
      ]
    },
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      "title": "Obtain result tables and heatmaps that help interpreting your results.",
      "topics": [
        "summarizeResults"
      ]
    },
    {
      "page": "synthesisAnalysis",
      "title": "De novo synthesis analysis of fatty acids until 16 carbons.",
      "topics": [
        "synthesisAnalysis"
      ]
    }
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