Package: LipidMS 3.0.6
LipidMS: Lipid Annotation for LC-MS/MS DDA or DIA Data
Lipid annotation in untargeted LC-MS lipidomics based on fragmentation rules. Alcoriza-Balaguer MI, Garcia-Canaveras JC, Lopez A, Conde I, Juan O, Carretero J, Lahoz A (2019) <doi:10.1021/acs.analchem.8b03409>.
Authors:
LipidMS_3.0.6.tar.gz
LipidMS_3.0.6.zip(r-4.5)LipidMS_3.0.6.zip(r-4.4)LipidMS_3.0.6.zip(r-4.3)
LipidMS_3.0.6.tgz(r-4.4-x86_64)LipidMS_3.0.6.tgz(r-4.4-arm64)LipidMS_3.0.6.tgz(r-4.3-x86_64)LipidMS_3.0.6.tgz(r-4.3-arm64)
LipidMS_3.0.6.tar.gz(r-4.5-noble)LipidMS_3.0.6.tar.gz(r-4.4-noble)
LipidMS_3.0.6.tgz(r-4.4-emscripten)LipidMS_3.0.6.tgz(r-4.3-emscripten)
LipidMS.pdf |LipidMS.html✨
LipidMS/json (API)
| # Install 'LipidMS' in R: |
| install.packages('LipidMS', repos = c('https://maialba3.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/maialba3/lipidms/issues
- CEdb - CEs database
- acylcerdb - AcylCeramides database
- adductsTable - Adducts table
- baconjdb - Bile acids conjugates database
- badb - Bile acids database
- carnitinesdb - Carnitines database
- cerPdb - Ceramides Phosphate database
- cerdb - Ceramides database
- cldb - Cardiolipins database
- confLevels - Confidence Annotation Levels
- dgdb - DGs database
- fadb - FAs database
- fahfadb - FAHFAs database
- hfadb - HFAs database
- lysopadb - LPAs database
- lysopaodb - O-LPA database
- lysopcdb - LPCs database
- lysopcodb - O-LPC database
- lysopcpdb - P-LPC database
- lysopedb - LPEs database
- lysopeodb - O-LPE database
- lysopepdb - P-LPE database
- lysopgdb - LPGs database
- lysopidb - LPIs database
- lysopsdb - LPSs database
- mgdb - MGs database
- nlsphdb - Neutral losses db for sphingoid bases. It is employed by idCerneg function.
- padb - PAs database
- pcdb - PCs database
- pcodb - O-PC database
- pcpdb - P-PC database
- pedb - PEs database
- peodb - O-PE database
- pepdb - P-PE database
- pgdb - PGs database
- pidb - PIs database
- psdb - PSs database
- smdb - SMs database
- sphPdb - Sphingoid bases phosphate database
- sphdb - Sphingoid bases database
- tgdb - TGs database
Last updated 3 months agofrom:93128283f5. Checks:OK: 7 NOTE: 2. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 01 2024 |
| R-4.5-win-x86_64 | NOTE | Nov 01 2024 |
| R-4.5-linux-x86_64 | OK | Nov 01 2024 |
| R-4.4-win-x86_64 | NOTE | Nov 01 2024 |
| R-4.4-mac-x86_64 | OK | Nov 01 2024 |
| R-4.4-mac-aarch64 | OK | Nov 01 2024 |
| R-4.3-win-x86_64 | OK | Nov 01 2024 |
| R-4.3-mac-x86_64 | OK | Nov 01 2024 |
| R-4.3-mac-aarch64 | OK | Nov 01 2024 |
Exports:alignmsbatchannotatemsbatchassignDBbatchdataProcessingchainFragscheckClasscheckIntensityRulescoelutingFragscombineChainscreateLipidDBcrossTablesdataProcessingddaFragsfillpeaksmsbatchfindCandidatesgetInclusionListgroupmsbatchidAcylCernegidAcylCerposidBAnegidCarposidCEposidCernegidCerPnegidCerposidCerPposidCLnegidDGposidFAHFAnegidFAnegidLPCnegidLPCposidLPEnegidLPEposidLPGnegidLPInegidLPSnegidMGposidNEGidPCnegidPConegidPCoposidPCpnegidPCposidPCpposidPEnegidPEonegidPEoposidPEpnegidPEposidPEpposidPGnegidPGposidPInegidPOSidPSnegidSMnegidSMposidSphnegidSphPnegidSphposidSphPposidTGposLipidMSapporganizeResultsploteicmsbatchplotLipidsplotticmsbatchrtdevplotsearchIsotopessearchIsotopesmsbatchsetmsbatch
Dependencies:base64encbslibcachemCHNOSZclicodetoolscolorspacecommonmarkcrayondigestdoParallelfarverfastmapfontawesomeforeachfsgluehtmltoolshttpuviteratorsjquerylibjsonlitelabelinglaterlifecyclemagrittrmemoisemimemunsellpromisesR6rappdirsRColorBrewerRcppreadMzXmlDatarlangsassscalesshinyshinythemessourcetoolsviridisLitewithrXMLxtable
